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These images from Lawrence Berkley National Lab show cells assembling, using the Lab's new technique which involves clustering cells together via complementary DNA attached to their surface.  (Source: Lawrence Berkley National Lab)
Researchers have developed a unique approach to cell construction

One of the greatest hopes in the medical research community is that tissues will one day be grown and implanted into the human body to replace aging or defective tissues and organs.  There has been much research into how to best assemble cells into complex tissues, which feature many cell types.

Past efforts have generally focused on growing cells in special molds and then grouping the molded microtissues together into a larger tissue.  Now researchers at the U.S. Department of Energy’s Lawrence Berkeley National Laboratory have developed a novel approach to build self-assembling microtissues by coating cells in complementary DNA

The new approach is a bottom-up method, which should allow for greater tissue complexity.  Carolyn Bertozzi, principal investigator in the research and the director of the DOE’s Molecular Foundry nanoscience research facility at Berkeley Lab, states, "Our method allows the assembly of multicellular structures from the ‘bottom up'.  In other words, we can control the neighbors of each individual cell in a mixed population. By this method, it may be possible to assemble tissues with more sophisticated properties."

Normally, DNA is found only in the chromatin material inside the cell’s nucleus (as well as small amounts being found inside mitochondria).  In order to get DNA on the outer surface of the cell, the researchers first genetically engineered the cells to have special artificial sugars on their surface.  They then created pieces of DNA 20 bases long which bind to these sugars and cover the cells.

Once the cells had their complementary DNA markers attached, they would group together forming microtissues.  The assembly is dependent on concentration and DNA complexity.  If the concentration of cells with the complementary strands is equal, then the tissue is heterogeneous.  If one is in a smaller concentration, the more numerous type groups around the less numerous type.

Scientists also found that simple repeating complementary sequences, such as the pair (CACACA…, TGTGTG…) cause the cells to bind faster than more complex sequences.  Finally, researchers found they could control how fast the cells bind by controlling how many sugars are produced for the cells' surfaces, and thus how many DNA molecules are attached to the cells' surfaces.

More methods of directed assembly should also be possible says Ms. Bertozzi.  She states, "For example, it might be possible to cluster DNA strands on specific cellular structures. Thus, distribution of DNA on the cell surface might be yet another parameter we can exploit to guide cell-cell interactions."

The team used their methods to create a two-cell tissue out of hematopoietic progenitor cells (a kind of stem cell for blood cells). These depend on the presence of the growth factor interleukin-3 by combining them in microtissues with CHO cells (Chinese hamster ovary cells) that were engineered to secrete interleukin-3.  When separated, the two cell types would not grow; but together, they created a microtissue.

More complex designs should also be possible.  Says Ms. Bertozzi, "Since DNA has essentially an unlimited capacity for information storage, there is no theoretical limit on the number of different cell types we can assemble in a structure.  In practice, I think structures with three or four cell types are quite feasible. Such structures would be relevant to many biological organs."

The scientists hope to tweak the method as it could allow for microtissues to be assembled in bulk reactors like chemical engineers create organic chemicals.  The key challenge remaining is that many cells lack the pathways needed to synthesize the sugars to attach the DNA.  Thus, the researchers are looking at alternatives to this approach.

The new work is reported in the March 2 early edition of the journal PNAS.



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Good research but
By William Gaatjes on 3/8/2009 7:56:01 PM , Rating: 4
quote:
More complex designs should also be possible. Says Ms. Bertozzi, "Since DNA has essentially an unlimited capacity for information storage, there is no theoretical limit on the number of different cell types we can assemble in a structure. In practice, I think structures with three or four cell types are quite feasible. Such structures would be relevant to many biological organs." The scientists hope to tweak the method as it could allow for microtissues to be assembled in bulk reactors like chemical engineers create organic chemicals. The key challenge remaining is that many cells lack the pathways needed to synthesize the sugars to attach the DNA. Thus, the researchers are looking at alternatives to this approach.


Very interesting, but what happens with these dna strands in the case the tissue is implemented inside a host ? Arethey cleaned up, or o they start to interfere with normal gene expressions ?

And is it not easier to use the information already present in the dna inside the stemcell to form any kind of cell and therefore any kind of tissue ? Because in our dna it is already present how tissues must work and perform. And a lot of research is being done or has been done. Combine the results of these efforts i say...

http://www.physorg.com/news155478898.html

http://www.physorg.com/news146922212.html

http://www.sanger.ac.uk/Teams/Team39/

http://www.physorg.com/news154882782.html

And some links on regrowing tissues methods found in nature:

quote:
Perfect Regeneration Salamanders are the only vertebrates able to regrow lost limbs, as well as many other body parts, throughout their lifetimes--and they can do it repeatedly. Studies of how a limb forms on the salamander have revealed that the process begins with rapid wound closure and a rush of cells from stump tissues to the amputation site. The next stages involve reversion of those cells to an embryonic state and their building of a new limb following the same steps as in embryonic development.


http://www.sciam.com/article.cfm?id=repairing-the-...

http://www.sciam.com/article.cfm?id=how-do-chamele...

http://www.sciam.com/slideshow.cfm?id=80DA9D9C-E55...

http://www.sciam.com/article.cfm?id=secret-of-hear...

http://www.sciam.com/article.cfm?id=regrowing-huma...

http://www.sciam.com/article.cfm?id=reprogramming-...

Combine all of this research and for sure an answer will be found.

On a side note, why to much sugar is bad for you :
http://www.physorg.com/news155550999.html

And if you wonder why, well even salty chips have sugar added. Sugar can be found in every food even when you not suspect it to be there.




RE: Good research but
By William Gaatjes on 3/8/2009 8:17:33 PM , Rating: 2
And some more :

Some genes are like macro's , they activate a whole statemachine of gene expressions , creation of protein , chemical signals that must be made. These macro's are build up of lots of seperate instructions combined together.
Some genes are more like basic instructions.

http://www.sciam.com/article.cfm?id=the-eyes-have-...

http://www.sciam.com/article.cfm?id=the-worlds-fir...

http://www.sciam.com/article.cfm?id=strange-but-tr...


RE: Good research but
By Chemical Chris on 3/9/2009 12:47:47 AM , Rating: 2
The DNA they are using is basically analogous to little ropes, like tying a ship to a dock. Also, DNA is usually double stranded, RNA is usually single stranded. I haven't looked into your links, but RNA is now known to be extremely important in gene regulation/expression and post-translational modification (DNA (gene) --> mRNA --> Protein: post-translational modification is when RNA or proteins modify the mRNA). So yes, adding small RNA willy-nilly could end up causing some serious problems. However, it is very powerful, and a lot of cell development is now thought to be guided by small RNA; so knowing which ones to add will allow one to tell a stem what to turn into.
But that is a long way off still. And DNA doesnt regulate gene expression in this fashion, so having extra DNA floating around like that shouldnt cause any kind of problem.
And since we cant tweak cells to that level of control yet, a good interim solution is to be able to engineer them so that they can be made into more complex macro-structures by tying them together with DNA ropes. Which will be useful for building bio-reactors as well as potential medical applications (several cells thick is better than nothing, and could serve as a guide for later, natural cell regrowth).

ChemC


RE: Good research but
By William Gaatjes on 3/9/2009 7:23:00 AM , Rating: 2
quote:
And DNA doesnt regulate gene expression in this fashion, so having extra DNA floating around like that shouldnt cause any kind of problem.


Well, i just don't feel comfortable with the idea. Nature has a way of adding functions to bio chemicals. This weekend i read some paper where they found that ATP is also used as a signalling chemical outside a cell while ATP is usually an energy supplier. This was in a specific tissue but anyway. I am not an expert, not at all. But i have a gut feeling on auto immune responses with this technology.


RE: Good research but
By William Gaatjes on 3/9/2009 7:28:36 AM , Rating: 2
Found it, the information about ATP is in the "Accidental Discovery Could Lead to Creation of Human Eyes in a Lab" article.


RE: Good research but
By geddarkstorm on 3/9/2009 2:38:24 PM , Rating: 2
This DNA is on the cell surface. Only DNA in the nucleus is transcribed. The only way exogenous DNA will get in there and integrate is via homologous recombination (a very rare event for exogenous DNA in humans and higher eukaryotes. Far more likely the DNA will be degraded). As long as this DNA is not homologous to anything, it isn't going in. Moreover, it'd have to have the proper promoter region for transcription anyways, and introns/exons for proper RNA processing for it to be used like a gene. Not going to happen except by purposeful design.

On the other hand, in the extracellular matrix can act as a signalling molecule for inflammation and immune response, so that's the only real danger I can see from this.

It's a cool idea though, specificity and strong binding all in one go. DNA is one of three thigns used by bacteria to make biofilms for instance, and those are immensely hard to destroy/break up on the biological scale.


RE: Good research but
By William Gaatjes on 3/9/2009 3:13:14 PM , Rating: 2
quote:
On the other hand, in the extracellular matrix can act as a signalling molecule for inflammation and immune response, so that's the only real danger I can see from this.


Wowsers, i did not expect to be so close to reality.

quote:
It's a cool idea though, specificity and strong binding all in one go. DNA is one of three thigns used by bacteria to make biofilms for instance, and those are immensely hard to destroy/break up on the biological scale.


Well, hard to get rid of dna and a possible unwanted immune response. But i admit, even when it would not be a usefull prodedure, the knowledge gained is usefull.


RE: Good research but
By geddarkstorm on 3/10/2009 3:26:03 PM , Rating: 2
I think they are using the DNA to help selectively clump the cells together and build up tissue in an intelligent, designed manner. One can just run some DNAse through the newly formed tissue to destroy all the DNA before implant. That would eliminate any problems like that.


I'm sorry but...
By JonnyDough on 3/8/2009 6:55:19 PM , Rating: 2
that's some really cool shit. Biological reactors? Amazing.




RE: I'm sorry but...
By Chemical Chris on 3/8/2009 9:20:47 PM , Rating: 2
quote:
that's some really cool shit. Biological reactors? Amazing.


Im afraid that bio-reactors, while sounding cool and futuristic, have been used for thousands of years. Usually for making booze, but also quite handy for cheese, for example.
Its just a cool name that has a wide range of possible meanings.
Of course, making a modern bioreactor is still an impressive display of both fine grain detail and huge industrial machinery.

But ya, this is an impressive development, and would be quite useful for making scaffolds of cells for use in a bioreactor. Basically, just have many fine, 1-3 cell thick meshes immersed in the broth, giving maximum surface area. The cells used in the mesh would be genetically engineered for some novel purpose, as well as the gene to manufacture the scaffold attachement site, add (or engineer) the connecting DNA strands, and away you go. The product would have to be something insoluble in the broth/gas to be recovered. But that would be useful for increasing the efficiency with which ethanol could be manufactured, for example.

ChemC


RE: I'm sorry but...
By Chemical Chris on 3/9/2009 2:50:30 AM , Rating: 2
for the ethanol example, I should clarify that there are quite a few different methods being used for ethanol manufacture, but most of the better ones use living cells at some point. Ideally enzymes and cofactors could just be added to the 'broth', but these are quite expensive to produce and purify, so whole-cell approaches are currently more attractive.

ChemC


Is this how...
By ninus3d on 3/9/2009 8:39:58 AM , Rating: 2
... the zerg does it?




RE: Is this how...
By Raidin on 3/9/2009 12:39:34 PM , Rating: 2
The Zerg Hive is basically a procreation machine. It produces offspring at the earliest stage in development in the lifespan of all Zerg species, before any specific development takes place.

At that point, through gene manipulation or cloning (injecting the DNA of the desired specific Zerg species), the natural development of the larva is altered to produce that specific species.

Which is why you can't take an adult Zerg and revert him to his larval state to begin anew.

Unless Blizzard redesigns the biological process.


As we age,
By phyl247 on 3/10/2009 3:11:32 AM , Rating: 2
As we age, the number and quality of stem cells that circulate in our body gradually decrease, leaving our body more susceptible to injury and other age-related health challenges. StemTech Health Science's Stem Enhance is the alternative to the controversial stem cells we hear about in the news. Patented Product StemEnhance supports the natural release of stem cells to promote optimal healing and stem cell physiology.

Officials at StemTech Health Sciences were aiming for Stem Enhance sales of $100,000 in the first month. Which was a hearty goal in itself. Imagine their astonishment when the 1st month's sales totaled over $1,000,000 and it just keeps rising. http://www.phyl247.biz office 970-985-4076




Micro Velcro
By menace on 3/10/2009 11:42:07 AM , Rating: 2
Looking at the pictures, I wonder if Velcro was the inspiration for this idea.




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