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It was just a normal day in the lab... until E. coli made the biggest evolutionary leap observed to date.  (Source: Michigan State)
E. Coli bacteria shows signs of evolution in lab testing

Despite an overwhelming body of scientific evidence, evolution is still a fiercely debate topic in some circles.  Many people take evolution for granted, simply understanding that it is the theory accepted by the scientific community based on the strong supporting evidence, and remain relatively oblivious to the controversy. 

However, the fact remains that yearly there are many protests and court cases in the U.S. and abroad where people try to block educational attempts to teach the theory of evolution and replace them with religious-based theories.

Fortunately for evolutionary scientists they now have perhaps the greatest piece of evidence of all -- the largest evolutionary leap observed to date.  The experiment started inconspicuously, with researchers at Michigan State University in East Lansing by using a single Escherichia coli bacterium and its descendants to found 12 populations.

Over 44,000 generations were observed and only minor mutations were observed, as is typical in these kinds of studies.  Typical beneficial mutations -- larger cell size, faster growth rates, and lower peak population densities -- were observed.

Then at generation 31,500 something shocking happened.  The bacteria evolved, gaining an entirely new gene that could process citrate, a nutrient that the bacteria could not previously use.  To put this in context, lack of citrate metabolism is one of E. coli's identifying traits.  And the newly evolved bacteria proceeded to dominate over their citrate-intolerant kin.

Says researcher Richard Lenski, "It's the most profound change we have seen during the experiment. This was clearly something quite different for them, and it's outside what was normally considered the bounds of E. coli as a species, which makes it especially interesting."

Lenski says the only two explanations are either an extremely improbable mutation such as a rare chromosomal inversion, or a series of small mutation adding up to a useful new gene.  Was the trait inevitable, guided by some all powerful hand?  Lenski turned to his freezer for the answer.  Unthawing the bacteria, from early generations, he found that pure chance had guided the evolutionary leap and that the bacteria did not evolve the trait.  He did find that the later generations after 20,000 did evolve the trait eventually, indicating something happened around this time that laid the groundwork for the evolution.

He and his fellow researchers are currently studying exactly what change allowed for the eventual evolution.  This experiment, however, proves that evolution does not always lead to best possible outcome (in that other lines did not achieve the same optimal trait).  This has been a major point of contention raised by creationists who point to structures in nature that serve ornamental or little purpose as proof of creationism.

Further, it goes to show that profound changes can happen, including the introduction of entirely new genes.  A particularly harsh criticism leveled in the past by was that profound genetic changes, including the creation of new genes, were never observed.  Considering a few genes can account for profound morphological differences in larger organism, this is a very salient piece of evidence for evolution's supporters.

Jerry Coyne, an evolutionary biologist at the University of Chicago lauded the research and took a bit of an opportunity to poke fun at creationists saying, "The thing I like most is it says you can get these complex traits evolving by a combination of unlikely events.  That's just what creationists say can't happen."

The findings are reported in the journal PNAS.



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A less-biased opinion... ;)
By MrBlastman on 6/11/2008 11:24:21 AM , Rating: 2
I will start out right now and state that I am a Creationist.

There, we have that out of the way. Let the mud-slinging commence. Now I will state that not only am I a creationist, but I am a _very_ strong supporter of science and technology and believe that they should go hand-in-hand without exception.

To be a creationist and to deny the importance of science/technology is ludicrous. This is where a lot of people get creationists wrong - as there are plenty of others like myself who value science to the highest degree.

I think stem cell research is absolutely critical to the advancement of mankind.

I also think that this article, which pokes at the fact that Creationists can be made fun of because it has been proven that a gene can evolve from nothing is absurd. I wholly believe that it is possible for cells/lifeforms to evolve over time into more useful beings. In order to accomplish this, genes would have to be created through evolution.

However, this article does nothing to further sway the idea that life came from absolutely nothing at all. It simply point that life can evolve over time from existing life which is quite obvious. All you have to do is look around you at examples in life. Examples such as pennicilin and other antibiotics and their neccessity. Viruses routinely evolve into different variants to overcome mans drugs which try to kill them off.

So, laugh all they want but they have not proven the key tennant of radical evolutionist belief - which is that life came from nothing at all all due to chance.

Nobody has proven this to be the case and I'm still waiting for it to be done.

I am happy though, that they have found definitive proof that genes can form through circumstance which does further back up everything that has been theorized in the past.




RE: A less-biased opinion... ;)
By BMFPitt on 6/11/2008 11:28:26 AM , Rating: 2
quote:
However, this article does nothing to further sway the idea that life came from absolutely nothing at all. It simply point that life can evolve over time from existing life which is quite obvious.
So in other words, it doesn't prove things that are entirely outside the scope of the theory of evolution?


RE: A less-biased opinion... ;)
By MrBlastman on 6/11/2008 11:32:10 AM , Rating: 5
In simplest terms - yes, it proves what has been theorized for a long time in the general theory or evolution.

This is why I prefaced with 'radical evolutionists,' which are in many ways very similar to religious fundamentalists (which are just as bad).

I did not like, however, the semi-negative spin that article placed on creationists, or at least that is how I took the tone of the writing.


RE: A less-biased opinion... ;)
By BMFPitt on 6/11/08, Rating: -1
RE: A less-biased opinion... ;)
By MrBlastman on 6/11/2008 11:47:32 AM , Rating: 4
I find it humorous that thinking people consider creationists whom have put a great deal of clout behind science, and also thought into the origins of the universe - are a joke.

The fallacy to that is that they fail to realize that neither my belief - nor theirs, has been proven.

Both are highly theoretical and as far as the world is concerned, either one could be proven true at some point - or - both could be proven completely wrong!

For all we both know life on earth was planted here from alien civilizations. *gasp* a Creationist with some semblance of thought acknowledging the possibility of a non-godly source of our life?

We're not all as thoughtless as it might seem. Unfortunately the general perception of us is granted through the narrow-focus that the media and rest of "publicania" portray us in.

I think that free-thought should be the tenant of advanced society and welcome those whom liesurely share other ideas with which we can all choose to either endorse or discard. To niche us all into a general category such as "Creationist" or "Evolutionist" without allowing for sub-diversity such as radical or fundamentalist is a crime.

The reality is there are varying degree of acceptance of either form of idea within their given community.


RE: A less-biased opinion... ;)
By masher2 (blog) on 6/11/2008 11:51:43 AM , Rating: 1
> "The fallacy to that is that they fail to realize that neither my belief - nor theirs, has been proven"

The fallacy in the above sentence is the belief that anything whatsoever in science can be undeniably proven...or that the lack of such incontrovertible proof matters in the least.

The scientific method is what brought us out of the caves...and it requires nothing more than we believe in the preponderance of evidence. Evolution is the most solidly supported theory in the history of science, with more evidence and less contradictory data than even the theory of gravity itself.


RE: A less-biased opinion... ;)
By MrBlastman on 6/11/2008 12:04:08 PM , Rating: 2
Without the scientific method the world has nothing.

General Evolution has undeniably been supported without a doubt. I 100% agree with you.

My divergence occurs when radicals begin to suggest the unproven portion which is that life was created from nothing.

They have as much evidence to support that as Creationists have to support their view. That is where we differ.

Please read my idea thoroughly before making as assumption as you did above. I was referencing the radical train of thought, not the general.


RE: A less-biased opinion... ;)
By MozeeToby on 6/11/2008 12:19:36 PM , Rating: 5
Occams Razor.

We can assume that God stepped in a created life from nothing.

-OR-

We can assume that over Billions of years, on Billions of planets, at least once something weird happened and produced self replicating molecules.

I'm not saying that your belief is wrong, I'm saying that your belief isn't science. Science can only investigate the natural laws of the Universe.


RE: A less-biased opinion... ;)
By MrBlastman on 6/11/2008 12:29:12 PM , Rating: 2
I never once placed Science and Religion in the same category. ;)

They are separate and should always be considered separate fields - however, to deny endeavors into either of the two because of this divide is wrong.

Religion is based on faith and Science is based on facts and data.

I think for society to be well-rounded, they must study and attempt to understand both. They don't have to believe in what they read about religion, but they should at least study it as it provides such a tremendous insight into the human mind and how cultures and societies operate.


RE: A less-biased opinion... ;)
By MozeeToby on 6/11/2008 12:44:18 PM , Rating: 3
I agree that society should be well rounded. Where I disagree is where you equation the study of life's origins with creationism.

As you said, religion and science are seperate entities and need not tread on one another. When you equate creationism to abiogenisis you are either moving religion over (not down, over ) into science, or vice versa.

The study of Abiogenisis is clearly not religion. Studies have been done both in the lab, in the field, and with telescopes looking at the steller neighborhood. Likewise, creationism is clearly not science. It is irrefutable (even if we understand it completely it is still possible to say God did it), and unresearchable.

It is important to think about the existance (or non-existance) of God and what effect that would and should have on our lives. I choose to believe in God not because of evidence I see (because, quite frankly, I don't see any) but because of what I feel and think.


RE: A less-biased opinion... ;)
By feraltoad on 6/16/2008 5:35:48 AM , Rating: 1
Perhaps we should also pause daily to consider the profound effects that Unicorns have had on our lives. I choose to believe in Unicorns not because of evidence I see but because of what I feel and think.


RE: A less-biased opinion... ;)
By Dentist on 6/25/2008 1:22:01 AM , Rating: 2
Scientists should ask the question: what could have caused the result?

1. Bacteria possess many genes coding for different enzymes. Enzymes are proteins with different shapes. A simple point mutation of a gene can change one or more amino-acids in the protein, possibly changing the shape of the active part of the enzyme. This may make the enzyme able to process some chemical but unable to process another. For example various known mutations in hemoglobin exist, resulting in sickle cell, thalassemia, etc. Yet a new gene has not appeared, rather an old one has been altered.
Q. Could a single mutation of a single gene cause E coli to develop the ability to use citrate in the culture medium? Yes. This has been known and published since 1983.
http://www.pubmedcentral.nih.gov/articlerender.fcg...
Is this 'evolution'? No.
"E.coli possesses all of the enzymes necessary for citrate metabilism since citrate is a substrate in the tricarboxylic acid cycle, the major metabilic pathway of aerobically growing cells. Therefore the inability to transport citrate seemed likely to be the major barrier to the utilization of citrate by E.coli. This study characterized the citrate transport systems of plasmid-conferred and chromosome-conferred citrate utilization in E. Coli."

Furthermore, the dailytech article is incorrect in asserting that evolution conferred on E coli 'an entirely new gene able to process citrate' since the authors of the study assert, "That meant the "citrate-plus" trait must have been something special – either it was a single mutation of an unusually improbable sort, a rare chromosome inversion, say, or else gaining the ability to use citrate required the accumulation of several mutations in sequence.'

2. Bacteria are known to pass genetic information via plasmids even between species. In other words, expose a bacteria penicillin-susceptible to one that is penicillin-resistant and the penicillin-susceptible bacteria may become resistant.
Q. Could the test samples have been contaminated by bacteria that can process citrate? Then it would not be evolution, but plasmid transfer.

3. Science involves being able to duplicate the results.
Q. The authors of this 'evolutionary breakthrough' study duplicated the results with cultures after but not before generation 20,000.
http://www.newscientist.com/channel/life/dn14094-b...
Clearly after generation 20,000 all the genetic material to be able to process citrate is already there, requiring only a simple random mutation to activate the gene.
Strangely by going back 500 generations they were not able to proceed randomly to the same mutated gene. What happened back at generation 20,000 to produce the genetic material? "Lenski and his colleagues are now working to identify just what that earlier change was, and how it made the Cit+ mutation possible more than 10,000 generations later."

Really? They don't know what it was but they know it is evolution? Very nice science!!!

4. Gene sequencing.
Q. Why have not the authors indicated exactly what gene changed in what way? Is it because it was a simple point mutation as above, or plasmid conferred property. If they have tens of thousands of cultures, why have they not performed proper tests to indicate what actually happened?

Oh wait, "To find out which, Lenski turned to his freezer, where he had saved samples of each population every 500 generations. These allowed him to replay history from any starting point he chose, by reviving the bacteria and letting evolution "replay" again."

But it does not seem that they are actually checking to see how what genes changed. No need, since they have already identified it as evolution. Break it up now. No more to see here.

_____

The study referred to in this article does not appear to be science. It is just a forum to proclaim the authors religion. Evolution.

Frankly, it demands more faith to accept evolution, than to accept creation. Science identifies anything that occurs with p<0.05 (less than 1 in 20 chance) as being not happening spontaneously.

For example, amino acids and fats cannot develop in the presence of oxygen. They must be compartmentalized. Let's say there is only a 1 in 1 million chance of an amino acid developing in such an environment (and it will be randomly broken up very quickly too). By compartmentalizing elements and the reaction products, scientists have been able to produce select types of molecues. Could the molecules develop spontaneously? No. How did this 1 in 1000000 (1 followed by 6 0s) chance happen, by outside input: the scientists compartmentalized the reaction.

The big bang, etc, theories assume that things that cannot happen spontaneously (1 in 1 followed by millions of 0s) would happen randomly over long ages. These cannot be true science, since true science would tell us that such occurrences could not happen spontaneously/randomly. Then how? Only by outside input. What outside input could caused the development of anything? Intelligent design. Oops. Politically incorrect. Big bang and evolution is still not science per se. They are evolutionary religion using scientific language.


RE: A less-biased opinion... ;)
By michael67 on 6/11/2008 3:50:37 PM , Rating: 1
I believe in evolution and think MrBlastman is fundamentally wrong.

Still MrBlastman comes whit reasonable arguments to defend his point of view, imho wrong but still reasonable and he is open to argument.

PLEASE DONT USE THE RATING SYSTEM TO PUT HIM BELOW +1

The rating system is not a tool, to use to win a argument its a tool for getting writ of idiots that cant make a valid argument


RE: A less-biased opinion... ;)
By BMFPitt on 6/11/08, Rating: 0